(where my_shared_database is your Shared Database name, and folder/folder/document is the path to your file in Geneious) input "my_shared_database:folder/folder/document"
To use a document from a Shared database use:
The local database is always called Local.įor example, to use a document from the local database as input use: To use documents from your local or shared database as input to a CLI command, add the name of the database followed by a :, and then the path to the file. Note that in prior versions, files for input to the CLI needed to be exported from the Geneious database so they were stored as files on your drive. Geneious –examples Using files from your local or shared database with the CLIįrom Geneious Prime 2022.2 onwards, the command line interface can be used directly on files in your Geneious database.
Install geneious prime how to#
To see some examples of how to use the CLI, type Geneious –options-for (add –advanced to see advanced options) To see all options for a given operation, type Geneious –list (add –-filter to filter the list on specific types of operations) Geneious operations in the CLI follow the basic format: However once this is created, the geneious CLI can be run by non-admin users. Note that sudo (admin) privileges are required to create the symlink. (this assumes Geneious is installed in the default location in Applications) Sudo ln -sf /Applications/Geneious Prime.app/Contents/Resources/app/resources/geneious /usr/local/bin On macOS you must create symlinks yourself so that the geneious command can be run from any directory in the Terminal. On Windows and Linux, no further configuration is required to run the CLI after installation of Geneious, just open the Command Prompt or Terminal and type geneious to run it.
Install geneious prime install#
You must also install any plugins you wish to use via the Plugins menu in the GUI interface. Your license must have been activated either in the GUI interface, or by configuring the geneious.properties file prior to using the CLI. To use the command line interface (CLI), you must have a licensed copy of Geneious installed on the machine. In Geneious Prime 2022 onwards, you can run Geneious operations from the command line. Please let us know if you can only use Microsoft Azure/Google authentication to login to Geneious Biologics, and are also interested in a Geneious Biologics/Geneious Prime integration.Command Line Interface Running Geneious Prime operations from the command line Our Geneious Prime/Biologics connector is currently available for non-SSO customers only. Please make sure you are using the latest version of Prime (currently 2023.1 at time of publishing)
Install geneious prime password#
Enter your email and password (SSO authentication not currently supported).Click on Cloud Database (beta) in the Sources in the left.Download/install the latest version of Geneious Prime from.
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